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Year 2017

Fillbrunn, Alexander, Dietz, Christian, Pfeuffer, Julianus, Rahn, René, Landrum, Gregory A., Berthold, Michael R., KNIME for reproducible cross-domain analysis of life science data, Journal of Biotechnology, 2017; Doi: https://doi.org/10.1016/j.jbiotec.2017.07.028, BibTeX.
Fillbrunn, Alexander, Wörteler, Leonard, Grossniklaus, Michael, Berthold, Michael R., Bucket Selection: A Model-Independent Diverse Selection Strategy for Widening. In: Proceedings of the 16th International Symposium on Intelligent Data Analysis (IDA 2017), 2017; BibTeX.

Year 2016

Berthold, Michael R., Höppner, Frank, On Clustering Time Series Using Euclidean Distance and Pearson Correlation. arXiv:1601.02213, 2016; BibTeX.
Copmans, D., Meinl, T., Dietz, C., van Leeuwen, M., Ortmann, J., Berthold, M.R., de Witte, P.A.M., A KNIME-based Analysis of the Zebrafish Photomotor Response Clusters the Phenotypes of 14 Classes of Neuroactive Molecules, Biomolecular Screening, 2016; BibTeX.
Dietz, Christian, Berthold, Michael R., KNIME for Open-Source Bioimage Analysis: A Tutorial, Focus on Bio-Image Informatics, pp. 179–197, Springer International Publishing, 2016; Doi: 10.1007/978-3-319-28549-8_7, BibTeX.
Gondek, Christopher, Hafner, Daniel, Sampson, Oliver R., Prediction of Failures in the Air Pressure System of Scania Trucks Using a Random Forest and Feature Engineering. In: Advances in Intelligent Data Analysis XV: 15th International Symposium, IDA 2016, Stockholm, Sweden, October 13-15, 2016, Proceedings, Boström, Henrik, Knobbe, Arno, Soares, Carlos, Papapetrou, Panagiotis, pp. 398–402, Springer International Publishing, Doi: 10.1007/978-3-319-46349-0_36, 2016; BibTeX.
Sampson, Oliver R., Berthold, Michael R., Widened Learning of Bayesian Network Classifiers. In: Advances in Intelligent Data Analysis XV: 15th International Symposium, IDA 2016, Stockholm, Sweden, October 13-15, 2016, Proceedings, Boström, Henrik, Knobbe, Arno, Soares, Carlos, Papapetrou, Panagiotis, pp. 215–225, Springer International Publishing, Doi: 10.1007/978-3-319-46349-0_19, 2016; BibTeX.

Year 2015

Aiche, Stephan, Sachsenberg, Timo, Kenar, Erhan, Walzer, Mathias, Wiswedel, Bernd, Kristl, Theresa, Boyles, Matthew, Duschl, Albert, Huber, Christian G., Berthold, Michael R., Reinert, Knut, Kohlbacher, Oliver, Workflows for automated downstream data analysis and visualization in large-scale computational mass spectrometry, PROTEOMICS, vol. 15, no. 8, pp. 1443–1447, Wiley, 2015; Doi: 10.1002/pmic.201400391, BibTeX.
Baur, Jennifer, Kötter, Tobias, Moreno-Villanueva, Maria, Sindlinger, Thilo, Berthold, Michael R., B\"urkle, Alexander, Junk, Michael, The MARK-AGE extended database: data integration and pre-processing, Mechanisms of Ageing and Development, vol. 151, pp. 31-37, 2015; Doi: http://dx.doi.org/10.1016/j.mad.2015.05.006, BibTeX.
Baur, Jennifer, Moreno-Villanueva, Maria, Kötter, Tobias, Sindlinger, Thilo, B\"urkle, Alexander, Berthold, Michael R., Junk, Michael, MARK-AGE data management: Cleaning, exploration and visualization of data, Mechanisms of Ageing and Development, vol. 151, pp. 38-44, 2015; Doi: "http://dx.doi.org/10.1016/j.mad.2015.05.007, BibTeX.
Benites, Fernando, Sapozhnikova, Elena P., Hierarchical interestingness measures for association rules with generalization on both antecedent and consequent sides, Pattern Recognition Letters, vol. 65, pp. 197 - 203, 2015; Doi: http://dx.doi.org/10.1016/j.patrec.2015.07.027, BibTeX.
Benites, Fernando, Sapozhnikova, Elena P., Improving Multi-label Classification by Means of Cross-Ontology Association Rules. In: Proceedings of the 17th LWA Workshops: KDML, IR and FGWM, Aachen, Germany, October 7-9, 2015, Series CEUR Workshop Proceedings, CEUR-WS.org, Doi: http://ceur-ws.org/, 2015; BibTeX.
Benites, Fernando, Sapozhnikova, Elena P., HARAM: a Hierarchical ARAM neural network for large-scale text classification. In: Proceedings of 2015 IEEE International Conference on Data Mining Workshops, The 3rd International Workshop on High Dimensional Data Mining (HDM’15), 2015; BibTeX.
Dreser, Nadine, Zimmer, Bastian, Dietz, Christian, Sügis, Elena, Pallocca, Giorgia, Nyffeler, Johanna, Meisig, Johannes, Blüthgen, Nils, Berthold, Michael R., Waldmann, Tanja, Leist, Marcel, Grouping of histone deacetylase inhibitors and other toxicants disturbing neural crest migration by transcriptional profiling, NeuroToxicology, vol. 50, pp. 56-70, 2015; BibTeX.
Fillbrunn, Alexander, Berthold, Michael R., Diversity-driven Widening of Hierarchical Agglomerative Clustering. In: Proceedings of the 14th International Symposium on Intelligent Data Analysis (IDA 2015), 2015; BibTeX.
Kötter, Tobias, G\"unnemann, Stephan, Berthold, Michael R., Faloutsos, Christos, Extracting Taxonomies from Bipartite Graphs. In: Proceedings of the International World Wide Web Conference, 2015; BibTeX.
Kötter, Tobias, G\"unnemann, Stephan, Berthold, Michael R., Faloutsos, Christos, Automatic Taxonomy Extraction from Bipartite Graphs. In: Proceedings of the IEEE Conference on Data Mining (ICDM), 2015; BibTeX.
Nicola, George, Berthold, Michael R., Hedrick, Michael P., Gilson, Michael K., Connecting proteins with drug-like compounds: Open source drug discovery workflows with BindingDB and KNIME, Database, vol. 2015, 2015; Doi: 10.1093/database/bav087, BibTeX.
Steinmetz, Fabian P., Mellor, Claire L., Meinl, Thorsten, Cronin, Mark T. D., Screening Chemicals for Receptor-Mediated Toxicological and Pharmacological Endpoints: Using Public Data to Build Screening Tools within a KNIME Workflow, Molecular Informatics, pp. 171–178, WILEY-VCH Verlag, 2015; Doi: 10.1002/minf.201400188, BibTeX.

Year 2014

V., Balmer, Nina, Stefanie, Klima,, Eugen, Rempel,, N., Ivanova, Violeta, Raivo, Kolde,, K., Weng, Matthias, Kesavan, Meganathan,, Margit, Henry,, Agapios, Sachinidis,, R., Berthold, Michael, G., Hengstler, Jan, Jörg, Rahnenführer,, Tanja, Waldmann,, Marcel, Leist,, From transient transcriptome responses to disturbed neurodevelopment: role of histone acetylation and methylation as epigenetic switch between reversible and irreversible drug effects, Archives of Toxicology, vol. 88, no. 7, pp. 1451-1468, Springer Berlin Heidelberg, 2014; Doi: 10.1007/s00204-014-1279-6, BibTeX.
Benites, Fernando, Sapozhnikova, Elena, Evaluation of Hierarchical Interestingness Measures for Mining Pairwise Generalized Association Rules, IEEE Transactions on Knowledge and Data Engineering, vol. 26, no. 12, pp. 3012-3025, 2014; Doi: 10.1109/TKDE.2014.2320722, BibTeX.
Benites, Fernando, Sapozhnikova, Elena P., Using Semantic Data Mining for Classification Improvement and Knowledge Extraction. In: Proceedings of the 16th LWA Workshops: KDML, IR and FGWM, Aachen, Germany, September 8-10, 2014, Seidl, Thomas, Hassani, Marwan, Beecks, Christian, Series CEUR Workshop Proceedings, vol. 1226, pp. 150-155, CEUR-WS.org, Doi: http://ceur-ws.org/Vol-1226/paper23.pdf, 2014; BibTeX.
Benites, Fernando, Simon, Svenja, Sapozhnikova, Elena, Mining Rare Associations between Biological Ontologies, PLoS ONE, vol. 9, no. 1, pp. e84475, Public Library of Science, 2014; Doi: 10.1371/journal.pone.0084475, BibTeX.
Fillbrunn, Alexander, Performante Auswertung von Vorhersagemodellen, Universität Konstanz, 2014; BibTeX.
Höppner, Frank, Peter, Sebastian, Temporal Pattern Languages to Characterize Time Flow, WIRE's Data Mining and Knowledge Discovery, 2014; BibTeX.
Horn, Martin, Aktive Segmentierung, July  2014; BibTeX.
Kötter, Tobias, Günnemann, Stephan, Berthold, Michael R., Christos, Faloutsos,, Fault-Tolerant Concept Detection in Information Networks, In: Advances in Knowledge Discovery and Data Mining. Springer, pp. 410–421, 2014; BibTeX.
Peter, Sebastian, Mustergraphen: Klassifikation von multivariaten Zeitreihen auf Basis von Intervallsequenzen, July  2014; BibTeX.
Sampson, Oliver, Berthold, Michael R., Widened KRIMP: Better Performance through Diverse Parallelism. In: Proceedings of the 13th International Symposium on Intelligent Data Analysis (IDA 2014), 2014; BibTeX.

Year 2013

Adä, Iris, Berthold, Michael R., EVE: a framework for event detection, Evolving Systems, vol. 4, no. 1, pp. 61-70, Springer-Verlag, 2013; Doi: 10.1007/s12530-012-9067-0, BibTeX.
Adä, Iris, Berthold, Michael R., Detecting Events in Molecular Dynamics Simulations. In: Proceedings of the 12th International Symposium on Intelligent Data Analysis(IDA 2013), 2013; BibTeX.
Beisken, Stephan, Meinl, Thorsten, Wiswedel, Bernd, de Figueiredo, Luis F, Berthold, Michael, Steinbeck, Christoph, KNIME-CDK: Workflow-driven cheminformatics, BMC Bioinformatics, vol. 14, no. 1, pp. 257, 2013; Doi: 10.1186/1471-2105-14-257, BibTeX.
Benites, Fernando, Sapozhnikova, Elena, Generalized Association Rules for Connecting Biological Ontologies. In: Proceedings of the 4th International Conference on Bioinformatics Models, Methods and Algorithms, Series BIOINFORMATICS 2013, 2013; BibTeX.
Berthold, Michael R., Wiswedel, Bernd, Gabriel, Thomas R., Fuzzy Logic in KNIME: Modules for Approximate Reasoning, International Journal of Computational Intelligence Systems, vol. 6, pp. 34-45, 2013; BibTeX.
Dietz, Christian, Horn, Martin, Berthold, Michael R., Integrative open-source software für die bildanalyse in der biologie, , 2013; BibTeX.
Dietz, Christian, Horn, Martin, Fyson, Heather, Berthold, Michael R., Integrative open-source software enables image analysis in biological sciences, Photonik international, 2013; BibTeX.
Fillbrunn, Alexander, Adä, Iris, Gabriel, Thomas R., Berthold, Michael R., Ensembles and PMML in KNIME, In: Proceedings of the PMML Workshop. KDD 2013, 2013; BibTeX.
Gesing, Sandra, Atkinson, Malcolm, Klampanos, Iraklis, Galea, Michelle, Berthold, Michael R., Barbera, Robert, Scardaci, Diego, Terstyanszky, Gabor, Kiss, Tamas, Kacsuk, Peter, The Demand for Consistent Web-Based Workflow Editors. In: Processings of WORKS'13, the 8th Workshop on Workflows in Support of Large-Scale Science, 2013; BibTeX.
Horn, Martin, Berthold, Michael R., Learning Precise Local Boundaries in Images from Human Tracings. In: Image Analysis and Processing – ICIAP 2013, Petrosino, Alfredo, Series Lecture Notes in Computer Science, vol. 8156, pp. 131–140, Springer, Doi: 10.1007/978-3-642-41181-6_14, 2013; BibTeX.
Ivanova, Violeta, Berthold, Michael R., Diversity-Driven Widening. In: Proceedings of the 12th International Symposium on Intelligent Data Analysis(IDA 2013), 2013; BibTeX.
Veronika, Lodermeyer,, Kristina, Suhr,, Nicola, Schrott,, Christian, Kolbe,, M, Stürzel, Christina, Daniela, Krnavek,, Jan, Münch,, Christian, Dietz,, Tanja, Waldmann,, Frank, Kirchhoff,, others, , 90K, an interferon-stimulated gene product, reduces the infectivity of HIV-1, Retrovirology, vol. 10, no. 1, pp. 111, BioMed Central Ltd, 2013; BibTeX.
Peter, Sebastian, Höppner, Frank, Berthold, Michael R., Pattern Graphs: Combining Multivariate Time Series and Labelled Interval Sequences for Classification. In: Research and Development in Intelligent Systems XXX, Springer, 2013; BibTeX.
A.N., Richarz,, M., Berthold,, E., Fioravanzo,, D., Neagu,, C., Yang,, J.-M., Zald─▒var-Comenges,, M.T.D., Cronin,, Integrated in silico modeling for the prediction of chronic toxicity, International Journal of Toxicology, vol. 32, pp. 72–73, 2013; BibTeX.
A.N., Richarz,, S.J., Enoch,, M., Hewitt,, J.C., Madden,, K., Przybylak,, C., Yang,, M.R.,, Berthold,, T., Meinl,, P., Ohl,, M.T., Cronin,, Flexible and transparent computational workflows for the prediction of target organ toxicity, The Toxicologist – A Supplement to Toxicology Science, vol. 132, no. 183, 2013; BibTeX.
Sampson, Oliver, Diversity Driven Parallel Data Mining, University of Konstanz, 2013; BibTeX.

Year 2012

Akbar, Zaenal, Ivanova, Violeta N., Berthold, Michael R., Parallel Data Mining Revisited. Better, Not Faster. In: Proceedings of the 11th International Symposium on Intelligent Data Analysis, pp. 23-34, 2012; BibTeX.
Anzali, S., Berthold, Michael R., Fioravanzo, E., Neagu, D., Péry, A.R.R., Worth, A.P., Yang, C., MTD, M.T.D. Cronin, Richarz, A.-N., Development of computational models for the risk assessment of cosmetic ingredients, IFSCC Magazine, vol. 15, no. 4, pp. 249-255, 2012; BibTeX.
Benites, Fernando, Sapozhnikova, Elena, Learning different concept hierarchies and the relations between them from classified data, In: Magdalena, R., Martínez, M., Martínez, J.M., Escandell, P., Vila, J., Intel. Data Analysis for Real-Life Applications: Theory and Practice. IGI Global, Doi: 10.4018/978-1-4666-1806-0.ch002, 2012; BibTeX.
Berthold, Michael R., Towards Bisociative Knowledge Discovery, In: Berthold, Michael R., Bisociative Knowledge Discovery. ( LNCS (LNAI) , Vol. 7250 ). Springer Verlag, pp. 1 – 10, 2012; BibTeX.
Berthold, Michael R., From Patterns to Discoveries, In: Gaber, Mohamed M., Journeys to Data Mining. Springer Verlag, pp. 43 – 49, 2012; BibTeX.
Dietz, Christian, Horn, Martin, Berthold, Michael R., Integrative Open-Source Software für die Bildanalyse in der Biologie, BioPhotonik, pp. 38–40, 2012; BibTeX.
Dubitzky, Werner, Kötter, Tobias, Schmidt, Oliver, Berthold, Michael R., Towards Creative Information Exploration Based on Koestler's Concept of Bisociation, In: Berthold, Michael R., Bisociative Knowledge Discovery. ( LNCS (LNAI) , Vol. 7250 ). Springer Verlag, pp. 11 – 32, 2012; BibTeX.
Eliceiri, Kevin W., Berthold, Michael R., Goldberg, Ilya G., Ibáñez, Luis, Manjunath, B. S., Martone, Maryann E., Murphy, Robert F., Peng, Hanchuan, Plant, Anne L., Roysam, Badrinath, Stuurmann, Nico, Swedlow, Jason R., Tomancak, Pavel, Carpenter, Anne E., Biological imaging software tools, Nature Methods, vol. 9, pp. 697-710, 2012; Doi: 10.1038/nmeth.2084, BibTeX.
Höppner, Frank, Peter, Sebastian, Berthold, Michael R., Enriching Multivariate Temporal Patterns with Context Information to Support Classification, In: Christian, Moewes,, Andreas, Nürnberger,, Computational Intelligence in Intelligent Data Analysis. ( Studies in Computational Intelligence , Vol. 445 ). Springer Berlin / Heidelberg, pp. 195-206, 2012; BibTeX.
Haun, Stefan, Gossen, Tatiana, Nürnberger, Andreas, Kötter, Tobias, Thiel, Kilian, Berthold, Michael R., On the Integration of Graph Exploration and Data Analysis: The Creative Exploration Toolkit, In: Berthold, Michael R., Bisociative Knowledge Discovery. ( LNCS (LNAI) , Vol. 7250 ). Springer Verlag, pp. 301 – 312, 2012; BibTeX.
Kötter, Tobias, Konzepterkennung in Informationsnetzwerken, January  2012; BibTeX.
Kötter, Tobias, Berthold, Michael R., (Missing) Concept Discovery in Heterogeneous Information Networks, In: Berthold, Michael R., Bisociative Knowledge Discovery. ( LNCS (LNAI) , Vol. 7250 ). Springer Verlag, pp. 230 – 245, 2012; BibTeX.
Kötter, Tobias, Berthold, Michael R., From Information Networks to Bisociative Information Networks, In: Berthold, Michael R., Bisociative Knowledge Discovery. ( LNCS (LNAI) , Vol. 7250 ). Springer Verlag, pp. 33 – 50, 2012; BibTeX.
Klauser, Benedikt, Saragliadis, Athanasios, Ausländer, Simon, Wieland, Markus, Berthold, Michael R., Hartig, Jörg S., Post-transcriptional Boolean computation by combining aptazymes controlling mRNA translation initiation and tRNA activation, Molecular BioSystems, no. 8, pp. 2242-2248, 2012; BibTeX.
Meinl, Thorsten, Wiswedel, Bernd, Berthold, Michael R., Workflow tools for managing biological and chemical data, In: Guha, Rajarshi, Bender, Andreas, Computational Approaches in Chemoinformatics and Bioinformatics. John Wiley & Sons, Inc., Hoboken, New Jersey, pp. 179–209, 2012; BibTeX.
Nagel, Uwe, Thiel, Kilian, Kötter, Tobias, Piatek, Dawid, Berthold, Michael R., Towards Discovery of Subgraph Bisociations, In: Berthold, Michael R., Bisociative Knowledge Discovery. ( LNCS (LNAI) , Vol. 7250 ). Springer Verlag, pp. 263 – 284, 2012; BibTeX.
Peter, Sebastian, Höppner, Frank, Berthold, Michael R., Pattern Graphs: A Knowledge-Based Tool for Multivariate Temporal Pattern Retrieval. In: 6th IEEE International Conference on Intelligent Systems (IS'12), vol. 2, pp. 67 - 73, 2012; BibTeX.
Peter, Sebastian, Höppner, Frank, Berthold, Michael R., Learning Pattern Graphs for Multivariate Temporal Pattern Retrieval. In: Proceedings of the 11th International Symposium on Intelligent Data Analysis, pp. 264-275, 2012; BibTeX.
Thiel, Kilian, Knotenähnlichkeiten aus Aktivierungsausbreitung, January  2012; BibTeX.
Thiel, Kilian, Berthold, Michael R., Node Similarities from Spreading Activation, In: Berthold, Michael R., Bisociative Knowledge Discovery. ( LNCS (LNAI) , Vol. 7250 ). Springer Verlag, pp. 246 – 262, 2012; BibTeX.
Weng, Matthias K., Zimmer, Bastian, Pöltl, Dominik, Broeg, Marc P., Ivanova, Violeta, Gaspar, John A., Sachinidis, Agapios, Wuellner, Ullrich, Waldmann, Tanja, Leist, Marcel, Extensive Transcriptional Regulation of Chromatin Modifiers during Human Neurodevelopment, PLoS ONE, vol. 7, no. 5, pp. e36708, Public Library of Science, 2012; Doi: 10.1371/journal.pone.0036708, BibTeX.
Bisociative Knowledge Discovery, Berthold, Michael R., Springer Verlag, 2012; BibTeX.
Synergies of Soft Computing and Statistics for Intelligent Data Analysis, Kruse, Rudolf, Berthold, Michael R., Moewes, Christian, Gil, Maria Angeles, Grzegorzewiski, Przemyslaw, Hryniewicz, Olgierd, Series Advances in Intelligent Systems and Computing, Springer, 2012; BibTeX.

Year 2011

Adä, Iris, Berthold, Michael R., Unifying Change - Towards a Framework for Detecting the Unexpected. In: Data Mining Workshops (ICDMW), 2011 IEEE 11th International Conference on Data Mining, Doi: 10.1109/ICDMW.2011.173, 2011; BibTeX.
Berthold, Michael R., Bisociative Knowledge Discovery. In: Proceedings of the 10th International Symposium on Intelligent Data Analysis (IDA 2011), Series Lecture Notes in Computer Science (LNCS), no. 7014, pp. 1-7, Springer-Verlag, 2011; BibTeX.
Borgelt, Christian, Braune, Christian, Kötter, Tobias, Grün, Sonja, New algorithms for finding approximate frequent item sets, Soft Computing - A Fusion of Foundations, Methodologies and Applications, pp. 1-15, Springer Berlin / Heidelberg, 2011; BibTeX.
Borgelt, Christian, Kötter, Tobias, Mining Fault-tolerant Item Sets using Subset Size Occurrence Distributions. In: Proceedings of the 10th International Symposium on Intelligent Data Analysis, 2011; BibTeX.
Brucker, Florian, Benites, Fernando, Sapozhnikova, Elena, Multi-label classification and extracting predicted class hierarchies, Pattern Recognition, vol. 44, no. 3, pp. 724 - 738, 2011; Doi: DOI: 10.1016/j.patcog.2010.09.010, BibTeX.
Brucker, Florian, Benites, Fernando, Sapozhnikova, Elena, An Empirical Comparison of Flat and Hierarchical Performance Measures for Multi-Label Classification with Hierarchy Extraction, In: Andreas, König,, Andreas, Dengel,, Knut, Hinkelmann,, Koichi, Kise,, RobertJ., Howlett,, LakhmiC., Jain,, Knowledge-Based and Intelligent Information and Engineering Systems. ( Lecture Notes in Computer Science , Vol. 6881 ). Springer Berlin Heidelberg, pp. 579-589, Doi: 10.1007/978-3-642-23851-2_59, 2011; BibTeX.
Horn, Martin, Berthold, Michael R., Towards active segmentation of cell images. In: IEEE International Symposium on Biomedical Imaging: From Nano to Macro, pp. 177–181, IEEE, 2011; BibTeX.
Jagla, Bernd, Wiswedel, Bernd, Coppée, Jean-Yves, Extending KNIME for next-generation sequencing data analysis, Bioinformatics, vol. 27, no. 20, pp. 2907-2909, 2011; BibTeX.
Kötter, Tobias, Berthold, Michael R., (Missing) Concept Discovery in Heterogeneous Information Networks. In: Proceedings of the Second International Conference on Computational Creativity, pp. 135-140, 2011; BibTeX.
Meinl, Thorsten, Ostermann, Claude, Berthold, Michael R., Maximum-Score Diversity Selection for Early Drug Discovery, Journal of Chemical Information and Modeling, vol. 51, no. 2, pp. 237-247, 2011; Doi: 10.1021/ci100426r, BibTeX.
Morent, Domink, Stathatos, Kostantinos, Lin, Wen-Ching, Berthold, Michael R., Comprehensive PMML Preprocessing in KNIME, In: Proceedings of the PMML Workshop. KDD 2011, 2011; BibTeX.
Nagel, Uwe, Thiel, Kilian, Kötter, Tobias, Piatek, Dawid, Berthold, Michael R., Bisociative Discovery of Interesting Relations Between Domains. In: Proceedings of the 10th International Symposium on Intelligent Data Analysis, Series Lecture Notes in Computer Science (LNCS), no. 7014, pp. 306-317, 2011; BibTeX.
Piatek, Dawid, Joint Modelling of Market Segments and Scale Usage Heterogeneity, Institut für Statistik, 2011; BibTeX.
Rie\ss, Thorsten, Dietz, Christian, Tomas, Martin, Ferrando-May, Elisa, Merhof, Dorit, Automated Image Processing for the Analysis of DNA Repair Dynamics, arXiv preprint arXiv:1101.3391, 2011; BibTeX.
Sampson, Oliver, Havrylyuk, Lyubomyr, Traunmüller, Richard, Bertini, Enrico, Visual Analytics meets Political Science: Visualizing Patterns and Changes in States' Policies toward Religion. In: Discovery Exhibition, October, 2011; BibTeX.
Schimanski, Goesta, Schimanski, Esther, Berthold, Michael R., Diagnostic Findings in Stapes Revision Surgery - Retrospective of 26 Years, Otology & Neurotology, vol. 32, pp. 373-383, 2011; BibTeX.
Wiswedel, Bernd, Berthold, Michael R., Supervised Learning in Parallel Universes using Neighborgrams. In: Proceedings of the 10th International Symposium on Intelligent Data Analysis, Series Lecture Notes in Computer Science (LNCS), no. 7014, pp. 388-400, Springer-Verlag, 2011; BibTeX.

Year 2010

Adä, Iris, Berthold, Michael R., The New Iris Data : Modular Data Generators. In: Proceedings of the 16th ACM SIGKDD international conference on Knowledge discovery and data mining, Series KDD '10, pp. 413–422, ACM, Doi: http://doi.acm.org/10.1145/1835804.1835858, 2010; BibTeX.
Adä, Iris, Thiel, Kilian, Berthold, Michael R., Distance Aware Tag Clouds. In: Proceedings of the IEEE International Conference on Systems, Man and Cybernetics, pp. 2316-2322, 2010; BibTeX.
Benites, Fernando, Brucker, Florian, Sapozhnikova, Elena, Multi-Label Classification by ART-based Neural Networks and Hierarchy Extraction. In: Proceedings of the International Joint Conference on Neural Network 2010, International Joint Conference on Neural Networks of the IEEE World Congress on Computational Intelligence (IJCNN - WCCI), 2010; BibTeX.
Guide to Intelligent Data Analysis: How to Intelligently Make Sense of Real Data, Berthold, Michael R., Borgelt, Christian, Hoeppner, Frank, Klawonn, Frank, vol. 42, Series Texts in Computer Science, Springer-Verlag, 2010; BibTeX.
Brandes, Ulrik, Lerner, Jürgen, Lubbers, Miranda J., McCarty, Christopher, Molina, José Luis, Nagel, Uwe, Recognizing modes of acculturation in personal networks of migrants. In: Applications of Social Network Analysis, Hirschi, Christian, Ingold, Karin, Serdült, Uwe, Series Procedia - Social and Behavioral Sciences, vol. 4, pp. 4–13, 2010; BibTeX.
Brandes, Ulrik, Lerner, Jürgen, Nagel, Uwe, Network Ensemble Clustering using Latent Roles, Advances in Data Analysis and Classification, 2010; BibTeX.
Cebron, Nicolas, Berthold, Michael R., Active Learning in Parallel Universes. In: Proceedings of CIKM, the 19th Conference on Information and Knowledge Management, ACM Press, 2010; BibTeX.
Gabriel, Thomas R., Lernen hierarchischer Fuzzy-Regelmodelle, 2010; BibTeX.
Haun, Stefan, Nürnberger, Andreas, Kötter, Tobias, Thiel, Kilian, Berthold, Michael R., CET: A Tool for Creative Exploration of Graphs. In: Proceedings of the European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases (ECML PKDD), Springer, 2010; BibTeX.
Kötter, Tobias, Berthold, Michael R., Concept Detection. In: Proceedings of the European Conference on Computing and Philosophy 2010, pp. 163–168, 2010; BibTeX.
Kötter, Tobias, Thiel, Kilian, Berthold, Michael R., Domain Bridging Associations Support Creativity. In: Proceedings of the International Conference on Computational Creativity, pp. 200–204, 2010; BibTeX.
Meinl, Thorsten, Maximum-Score Diversity Selection, July  2010; BibTeX.
Peter, Sebastian, Höppner, Frank, Finding Temporal Patterns using Constraints on (Partial) Absence, Presence and Duration. In: International Conference on Knowledge-Based and Intelligent Information & Engineering Systems, pp. 442–451, 2010; BibTeX.
Reformat, Marek, Berthold, Michael R., Editorial, International Journal of Approximate Reasoning, 2010; Doi: doi:10.1016/j.ijar.2010.07.007, BibTeX.
Thiel, Kilian, Berthold, Michael R., Node Similarities from Spreading Activation. In: Proceedings of the IEEE International Conference on Data Mining, pp. 1085–1090, 2010; BibTeX.
Wiswedel, Bernd, Hoeppner, Frank, Berthold, Michael R., Learning in Parallel Universes, Data Mining and Knowledge Discovery, vol. 21, pp. 130–150, 2010; BibTeX.
Intelligent Data Analysis IX, Cohen, Paul R., Adams, Niall M., Berthold, Michael R., vol. LNCS 6065, Series Lecture Notes in Computer Science, Springer Verlag, 2010; BibTeX.

Year 2009

Berthold, Michael R., Einwurf: Data Mining - Daten suchen und finden?, Praxis der Wirtschaftsinformatik, no. 268, pp. 4-5, 2009; BibTeX.
Berthold, Michael R., Brandes, Ulrik, Kötter, Tobias, Mader, Martin, Nagel, Uwe, Thiel, Kilian, Pure Spreading Activation is Pointless. In: Proceedings of the CIKM the 18th Conference on Information and Knowledge Management, pp. 1915–1919, 2009; BibTeX.
Berthold, Michael R., Cebron, Nicolas, Dill, Fabian, Gabriel, Thomas R., Kötter, Tobias, Meinl, Thorsten, Ohl, Peter, Thiel, Kilian, Wiswedel, Bernd, KNIME - The Konstanz Information Miner, SIGKDD Explorations, vol. 11, no. 1, 2009; BibTeX.
Borgelt, Christian, Meinl, Thorsten, Full Perfect Extension Pruning for Frequent Subgraph Mining, In: Zigheda, Djamel A., Tsumoto, Shusaku, Ras, Zbigniew W., Hacid, Hakim, Mining Complex Data. ( Studies in Computational Intelligence , Vol. 165 ). Berlin, Germany: Springer, pp. 189–205, Doi: 10.1007/978-3-540-88067-7_11, 2009; BibTeX.
Brandes, Ulrik, Lerner, Jürgen, Nagel, Uwe, Nick, Bobo, Structural Trends in Network Ensembles, In: Complex Networks. ( Stud. in Comput. Intell. , Vol. 207/2009 ). Springer, pp. 83–97, 2009; BibTeX.
Cebron, Nicolas, Berthold, Michael R., Active Learning for Object Classification, Data Mining and Knowledge Discovery, vol. 18, no. 2, pp. 283–299, 2009; BibTeX.
Dreweke, Alexander, Fischer, Ingrid, Werth, Tobias, Wörlein, Marc, Text Mining in Program Code, In: Song, Min, Wu, Yi-Fang Brook, Handbook of Research on Text and Web Mining Technologies. Hershey: Idea Group Publishing, pp. 626 – 645, 2009; BibTeX.
Gabriel, Thomas R., Thiel, Kilian, Berthold, Michael R., Multi-Dimensional Scaling applied to Hierarchical Rule Systems. In: Proceedings of the IFSA World Congress and the 6th Conference of EUSFLAT, pp. 944–949, 2009; BibTeX.
Hong, Seok-Hee, Mader, Martin, Generalizing the Shift Method for Rectangular Shaped Vertices with Visibility Constraints. In: Proceedings of the 16th International Symposium on Graph Drawing, Ioannis, Tollis,, Maurizio, Patrignani,, Series Lecture Notes in Computer Science, vol. 5417, pp. 278-283, Springer Berlin / Heidelberg, 2009; BibTeX.
Meinl, Thorsten, Berthold, Michael R., Crossover Operators for Multiobjective k-Subset Selection. In: GECCO '09: Proceedings of the 11th Annual conference on Genetic and evolutionary computation, pp. 1809–1810, ACM, Doi: 10.1145/1569901.1570173, 2009; BibTeX.
Meinl, Thorsten, Cebron, Nicolas, Gabriel, Thomas R., Dill, Fabian, Kötter, Tobias, Ohl, Peter, Thiel, Kilian, Wiswedel, Bernd, Berthold, Michael R., The Konstanz Information Miner 2.0. In: Proceedings of OSDM 2009, pp. 26–31, 2009; BibTeX.
Patel, Vimla L., Shortliffe, Edward H., Stefanelli, Mario, Szolovits, Peter, Berthold, Michael R., Bellazzi, Riccardo, Abu-Hanna, Ameen, The coming of age of artificial intelligence in medicine (Position Paper), Artificial Intelligence in Medicine, vol. 46, pp. 5–17, 2009; BibTeX.
Sapozhnikova, Elena P., Multi-label Classification with ART Neural Networks. In: Knowledge Discovery and Data Mining, 2009. WKDD 2009. Second International Workshop on, Jan, pp. 144-147, Doi: 10.1109/WKDD.2009.200, 2009; BibTeX.
Sapozhnikova, Elena P., ART-Based Neural Networks for Multi-label Classification, In: NiallM., Adams,, Céline, Robardet,, Arno, Siebes,, Jean-Francois, Boulicaut,, Advances in Intelligent Data Analysis VIII. ( Lecture Notes in Computer Science , Vol. 5772 ). Springer Berlin Heidelberg, pp. 167-177, Doi: 10.1007/978-3-642-03915-7_15, 2009; BibTeX.
Werth, Tobias, Dreweke, Alexander, Wörlein, Marc, Fischer, Ingrid, Philippsen, Michael, DAG Mining in Procedural Abstraction, In: Cao, L., Yu, P. S., Zhang, C., Zhang, H., Data Mining for Business Applications. Berlin/Heidelberg: Springer-Verlag, pp. 209–224, 2009; BibTeX.
Zeller, Michael, Grossman, Robert, Lingenfelder, Christoph, Berthold, Michael R., Marcade, Erik, Pechter, Rick, Hoskins, Mike, Thompson, Wayne, Holada, Rich, Open standards and cloud computing: KDD-2009 panel report, In: KDD '09: Proceedings of the 15th ACM SIGKDD international conference on Knowledge discovery and data mining. New York, NY, USA: ACM, pp. 11-18, Doi: http://doi.acm.org/10.1145/1557019.1557027, 2009; BibTeX.

Year 2008

Berthold, Michael R., Dill, Fabian, Kötter, Tobias, Thiel, Kilian, Supporting Creativity: Towards Associative Discovery of New Insights. In: Proceedings of PAKDD 2008, 2008; BibTeX.
Cebron, Nicolas, Aktives Lernen zur Klassifikation groesser Datenmengen mittels Exploration und Spezialisierung, 2008; BibTeX.
Cebron, Nicolas, Berthold, Michael R., Adaptive prototype-based fuzzy classification, Fuzzy Sets and Systems, vol. 159, no. 21, pp. 2806–2818, 2008; BibTeX.
Fischer, Ingrid, Graph Transformations and Neural Networks, In: Wang, John, Encyclopedia of Data Warehousing and Mining. IGI Global, pp. 534–539, 2008; BibTeX.
Fischer, Ingrid, Meinl, Thorsten, Subgraph Mining, In: Wang, John, Encyclopedia of Data Warehousing and Mining. Hershey, PA, USA: IGI Global, pp. 1865–1870, 2008; BibTeX.
Werth, Tobias, Dreweke, Alexander, Wörlein, Marc, Fischer, Ingrid, Philippsen, Michael, DAGMA: Mining Directed Acyclic Graphs. In: Proceedings of the ECDM 2008 (IADIS European Conference on Data Mining (ECDM) ), IADS, , pp. 11–17, IADIS PRESS, 2008; BibTeX.
Wiswedel, Bernd, Lernen in Parallelen Universen, 2008; BibTeX.
Discovery Science, Berthold, Michael R., Boulicaut, Jean-Francois, vol. 5255, Series Lecture Notes in Artificial Intelligence, LNAI, Springer Verlag, 2008; BibTeX.

Year 2007

Berthold, Michael R., Cebron, Nicolas, Dill, Fabian, Gabriel, Thomas R., Kötter, Tobias, Meinl, Thorsten, Ohl, Peter, Sieb, Christoph, Thiel, Kilian, Wiswedel, Bernd, KNIME: The Konstanz Information Miner, In: Data Analysis, Machine Learning and Applications - Proceedings of the 31st Annual Conference of the Gesellschaft für Klassifikation e.V.. ( Studies in Classification, Data Analysis, and Knowledge Organization ). Berlin, Germany: Springer, pp. 319–326, 2007; BibTeX.
Berthold, Michael R., Cebron, Nicolas, Dill, Fabian, Gabriel, Thomas R., Kötter, Tobias, Meinl, Thorsten, Ohl, Peter, Sieb, Christoph, Thiel, Kilian, Wiswedel, Bernd, Open Source Data Pipelining fuer Interaktive Datenexploration. In: Aktuelle Trends in der Softwareforschung (do it.software-forschungstag 2007), MFG Stiftung Baden-Wuerttemberg, 2007; BibTeX.
Berthold, Michael R., Wiswedel, Bernd, Learning in Parallel Universes. In: Parallel Universes and Local Patterns, Berthold, Michael R., Morik, Katharina, Siebes, Arno, Series Dagstuhl Seminar Proceedings, no. 7181, Internationales Begegnungs- und Forschungszentrum fuer Informatik (IBFI), Schloss Dagstuhl, Germany, 2007; BibTeX.
Cebron, Nicolas, Berthold, Michael R., An Adaptive Multi Objective Selection Strategy for Active Learning. 2007; BibTeX.
Dreweke, Alexander, Wörlein, Marc, Fischer, Ingrid, Schell, Dominic, Meinl, Thorsten, Philippsen, Michael, Graph-Based Procedural Abstraction. In: Proc. International Symposium on Code Generation and Optimization CGO '07, IEEE, , 11–14 March, pp. 259–270, Doi: 10.1109/CGO.2007.14, 2007; BibTeX.
Fatta, Giuseppe Di, Berthold, Michael R., Decentralized load balancing for highly irregular search problems, Microprocessors and Microsystems, vol. 31, pp. 273–281, 2007; BibTeX.
Meinl, Thorsten, Wörlein, Marc, Urzova, Olga, Fischer, Ingrid, Philippsen, Michael, The ParMol Package for Frequent Subgraph Mining, Electronic Communications of the EASST, vol. 1, pp. 1–12, 2007; BibTeX.
Sieb, Christoph, Meinl, Thorsten, Berthold, Michael R., Parallel and Distributed Data Pipelining with KNIME, The Mediterranean Journal of Computers and Networks, vol. 3, no. 2, pp. 43–51, SoftMotor Ltd., 2007; BibTeX.
Thiel, Kilian, Dill, Fabian, Kötter, Tobias, Berthold, Michael R., Towards Visual Exploration of Topic Shifts. In: IEEE International Conference on Systems, Man and Cybernetics, 2007; BibTeX.
Wiswedel, Bernd, Berthold, Michael R., Fuzzy Clustering in Parallel Universes, International Journal of Approximate Reasoning, vol. 45, no. 3, pp. 439–454, 2007; BibTeX.
Wiswedel, Bernd, Patterson, David E., Berthold, Michael R., Interactive Exploration of Fuzzy Clusters, In: de Oliveira, Jose Valente, Pedrycz, W., Advances in Fuzzy Clustering and its Applications. John Wiley and Sons, pp. 123–136, 2007; BibTeX.
Proceedings of the 2007 Annual Meeting of the North American Fuzzy Information Processing Society, Reformat, Marek, Berthold, Michael R., IEEE Press, 2007; BibTeX.
CompLife 2007, Siebes, Arno, Berthold, Michael R., Feelders, Ad, Glen, Robert C., American Institute of Physics, 2007; BibTeX.

Year 2006

Berthold, Michael R., Cebron, Nicolas, Dill, Fabian, Fatta, Giuseppe Di, Gabriel, Thomas R., Georg, Florian, Meinl, Thorsten, Ohl, Peter, Sieb, Christoph, Wiswedel, Bernd, KNIME: the Konstanz Information Miner. In: Proceedings 4th Annual Industrial Simulation Conference, Workshop on Multi-Agent Systems and Simulation (ISC 2006), 2006; BibTeX.
Berthold, Michael R., Nürnberger, Andreas, Towards Associative Information Access. In: Proceedings of AISB'06 (Adaptation in Artificial and Biological Systems), vol. 3, pp. 98–101, Society for the Study of Artificial Intelligence and the Simulation of Behaviour, University of Bristol, UK, 2006; BibTeX.
Borgelt, Christian, Meinl, Thorsten, Full Perfect Extension Pruning for Frequent Graph Mining. In: Proc. Sixth IEEE International Conference on Data Mining Workshops ICDM Workshops 2006, Dec., pp. 263–268, Doi: 10.1109/ICDMW.2006.82, 2006; BibTeX.
Cebron, Nicolas, Berthold, Michael R., Adaptive Fuzzy Clustering. In: Proc. Conf. North American Fuzzy Information Processing Society (NAFIPS 2006), 2006; BibTeX.
Cebron, Nicolas, Berthold, Michael R., Adaptive Active Classification of Cell Assay Images. In: Knowledge Discovery in Databases: PKDD 2006 (PKDD/ECML), Lecture Notes in Computer Science, vol. 4213, pp. 79–90, Springer Berlin / Heidelberg, 2006; BibTeX.
Fatta, Guiseppe Di, Berthold, Michael R., Dynamic Load Balancing for the Distributed Mining of Molecular Structures, IEEE Transactions on Parallel and Distributed Systems, Special Issue on High Performance Computational Biology, vol. 17, no. 8, pp. 773–785, 2006; BibTeX.
Gabriel, Thomas R., Thiel, Kilian, Berthold, Michael R., Rule Visualization based on Multi-Dimensional Scaling. In: IEEE International Conference on Fuzzy Systems, 2006; BibTeX.
Meinl, Thorsten, Wörlein, Marc, Fischer, Ingrid, Philippsen, Michael, Mining Molecular Datasets on Symmetric Multiprocessor Systems. In: Proceedings of the 2006 IEEE International Conference on Systems, Man and Cybernetics, IEEE, , 8–11 Oct., vol. 2, pp. 1269–1274, Doi: 10.1109/ICSMC.2006.384889, 2006; BibTeX.
Meinl, Thorsten, Wörlein, Marc, Urzova, Olga, Fischer, Ingrid, Philippsen, Michael, The ParMol package for frequent subgraph mining. In: Third International Workshop on Graph Based Tools, Zündorf, Albert, Varro, Daniel, 21–22 Sep., 2006; BibTeX.
Sieb, Christoph, Fatta, Giuseppe Di, Berthold, Michael R., A Hierarchical Distributed Approach for Mining Molecular Fragments. In: Proceedings of the International Workshop on Parallel Data Mining (PKDD/ECML 2006), pp. 25–37, 2006; BibTeX.
Wörlein, Marc, Dreweke, Alexander, Meinl, Thorsten, Fischer, Ingrid, Philippsen, Michael, Edgar: the Embedding-baseD GrAph MineR. In: Proceedings of the International Workshop on Mining and Learning with Graphs, Gärtner, Thomas, Garriga, Gemma C., Meinl, Thorsten, pp. 221–228, 2006; BibTeX.
Computational Life Sciences II, Berthold, Michael R., Glen, Robert C., Fischer, Ingrid, Series Lecture Notes in Bioinformatics LNBI4216, Springer Verlag, 2006; BibTeX.
Proceedings of MLG 2006, Gärtner, Thomas, Garriga, Gemma C., Meinl, Thorsten, , 2006; BibTeX.
Thomas Gärtner Gemma C. Garriga Thorsten Meinl Proceedings of MLG 2006: International Workshop on Mining and Learning with Graphs. , Berlin, Germany, 2006; BibTeX.

Year 2005

Berthold, Michael R., Data Analysis in the Life Sciences: Sparking Ideas. In: Knowledge Discovery in Databases, Machine Learning: PKDD/ECML 2005 (PKDD/ECML), Series Lecture Notes in AI, no. 3720, pp. 1, Springer-Verlag, 2005; BibTeX.
Berthold, Michael R., Wiswedel, Bernd, Patterson, David E., Interactive Exploration of Fuzzy Clusters Using Neighborgrams, Fuzzy Sets and Systems, vol. 149, no. 1, pp. 21–37, Elsevier, 2005; BibTeX.
Borgelt, Christian, Berthold, Michael R., Patterson, David E., Molecular Fragment Mining for Drug Discovery. ECSQA RU, Series Lecture Notes in AI, no. 3571, pp. 1002–1013, Springer Verlag, 2005; BibTeX.
Borgelt, Christian, Meinl, Thorsten, Berthold, Michael R., MoSS: A Program for Molecular Substructure Mining. In: Proceedings of OSDM 2005 (Open Source Data Mining Workshop on Frequent Pattern Mining Implementations), Goethals, Bart, Nijssen, Siegfried, Zaki, Mohammed J., August, pp. 6–15, Doi: 10.1145/1133905.1133908, 2005; BibTeX.
Cebron, Nicolas, Berthold, Michael R., Mining of Cell Assay Images Using Active Semi-Supervised Clustering. In: IEEE International Conference on Data Mining, Workshop Computational Intelligence in Data Mining (ICDM 05), pp. 63–69, 2005; BibTeX.
Fatta, Giuseppe Di, Berthold, Michael R., High Performance Subgraph Mining in Molecular Compounds. In: Proceedings of the International Conference on High Performance Computing and Communications, Series Lecture Notes in Computer Science (LNCS), Springer Verlag, 2005; BibTeX.
Fatta, Giuseppe Di, Berthold, Michael R., Efficient Mining of Discriminative Fragments. In: Proceedings of International Conference on Parallel and Distributed Computing and Systems, ACTA Press, 2005; BibTeX.
Fischer, Ingrid, Meinl, Thorsten, Subgraph Mining, In: Wang, John, Encyclopedia of Data Warehousing and Mining. Hershey, PA, USA: Idea Group, pp. 1059–1063, 2005; BibTeX.
Gabriel, Thomas R., Berthold, Michael R., Missing Values in Fuzzy Rule Induction. In: IEEE Conference on Systems, Man and Cybernetics, IEEE Press, 2005; BibTeX.
Gabriel, Thomas R., Pintilie, A. Simona, Berthold, Michael R., Exploring Hierarchical Rule Systems in Parallel Coordinates. In: Proceedings of the 6th International Symposium on Intelligent Data Analysis (IDA 2005), Series Lecture Notes in Computer Science (LNCS), no. 3646, pp. 97–108, Springer Verlag, 2005; BibTeX.
Meinl, Thorsten, Fischer, Ingrid, Philippsen, Michael, Parallel Mining for Frequent Fragments on a Shared-Memory Multiprocessor -Results and Java-Obstacles-. In: LWA 2005 - Beiträge zur GI-Workshopwoche Lernen, Wissensentdeckung, Adaptivität (Workshop der GI-Fachgruppe "Maschinelles Lernen, Wissensentdeckung, Data Mining" (FGML) ), Bauer, Mathias, Kröner, Alexander, Brandherm, Boris, 10 Oct., pp. 196–201, 2005; BibTeX.
Morent, Dominik, Patterson, David E., Berthold, Michael R., Towards context-aware similarity metrics. In: Proceedings of ICMLC'05 (International Conference on Machine Learning and Cybernetics), vol. 9, pp. 5596–5598, IEEE Press, 2005; BibTeX.
Wiswedel, Bernd, Berthold, Michael R., Fuzzy Clustering in Parallel Universes. In: Proc. Conf. North American Fuzzy Information Processing Society (NAFIPS 2005), pp. 567–572, 2005; BibTeX.
Wiswedel, Bernd, Berthold, Michael R., Fuzzy Clustering in Parallel Universes with Noise Detection. In: IEEE International Conference on Data Mining, Workshop Computational Intelligence in Data Mining (ICDM 05), pp. 29–37, 2005; BibTeX.
Wörlein, Marc, Meinl, Thorsten, Fischer, Ingrid, Philippsen, Michael, A quantitative comparison of the subgraph miners MoFa, gSpan, FFSM, and Gaston. In: Knowledge Discovery in Database: PKDD 2005, Jorge, Alipio, Torgo, Luis, Brazdil, Pavel, Camacho, Rui, Gama, Joao, Series Lecture Notes in Computer Science, vol. 3721, pp. 392–403, Springer, Doi: 10.1007/11564126_39, 2005; BibTeX.
Computational Life Science, Berthold, Michael R., Glen, Robert C., Kohlbacher, Oliver, Diederichs, Kay, Fischer, Ingrid, Series Lecture Notes in Bioinformatics LNBI3695, Springer Verlag, 2005; BibTeX.
Siegfried Nijssen Thorsten Meinl George Karypis Proceedings of MGTS 2005: 3rd International Workshop on Mining Graphs, Trees and Sequences. , Porto, Portugal, 2005; BibTeX.

Year 2004

Berthold, Michael R., Bradley, Elizabeth, Kruse, Rudolf, Guest-Editorial: Advances in Intelligent Data Analysis, Intelligent Data Analysis, vol. 8, no. 5, pp. 437–438, 2004; BibTeX.
Berthold, Michael R., Ortolani, Marco, Patterson, David E., Höppner, Frank, Callan, Ondine, Hofer, Heiko, Fuzzy Information Granules in Time Series Data, International Journal of Intelligent Systems, vol. 19, no. 7, pp. 607–618, 2004; BibTeX.
Berthold, Michael R., Patterson, David E., Towards Learning in Parallel Universes. In: Proceedings of the 2004 IEEE Int'l Conference on Fuzzy Systems (IEEE Int'l Conference on Fuzzy Systems), vol. 1, pp. 67–71, IEEE Press, 2004; BibTeX.
Borgelt, Christian, Meinl, Thorsten, Berthold, Michael R., Advanced pruning strategies to speed up mining closed molecular fragments. In: Proceedings of the IEEE International Conference on Systems, Man and Cybernetics, Thissen, Wil, Wieringa, Peter, Pantic, Maja, Ludema, Marcel, 10–13 Oct., vol. 5, pp. 4565–4570, Doi: 10.1109/ICSMC.2004.1401251, 2004; BibTeX.
Fatta, Giuseppe Di, Berthold, Michael R., Distributed Mining of Molecular Fragments. In: IEEE International Conference on Data Mining, Workshop on Data Mining and the Grid, pp. 1–9, IEEE, IEEE Press, 2004; BibTeX.
Fischer, Ingrid, Meinl, Thorsten, Graph Based Molecular Data Mining - An Overview. In: Proc. IEEE International Conference on Systems, Man and Cybernetics, Thissen, Wil, Wieringa, Peter, Pantic, Maja, Ludema, Marcel, 10–13 Oct., vol. 5, pp. 4578–4582, Doi: 10.1109/ICSMC.2004.1401253, 2004; BibTeX.
Gabriel, Thomas R., Berthold, Michael R., Influence of fuzzy norms and other heuristics on ``Mixed Fuzzy Rule Formation'', International Journal of Approximate Reasoning (IJAR), vol. 35, pp. 195–202, Elsevier, 2004; BibTeX.
Hofer, Heiko, Borgelt, Christian, Berthold, Michael R., Large Scale Mining of Molecular Fragments with Wildcards, Intelligent Data Analysis, vol. 8, no. 5, pp. 495–504, IOS Press, 2004; BibTeX.
Meinl, Thorsten, Erweiterte Fragmentsuche in Moleküldatenbanken, Computer Science Department 2, University of Erlangen-Nuremberg, diploma thesis, August, 2004; BibTeX.
Meinl, Thorsten, Berthold, Michael R., Hybrid Fragment Mining with MoFa and FSG. In: Proceedings of the IEEE International Conference on Systems, Man and Cybernetics, Thissen, Wil, Wieringa, Peter, Pantic, Maja, Ludema, Marcel, 10–13 Oct., vol. 5, pp. 4559–4564, Doi: 10.1109/ICSMC.2004.1401250, 2004; BibTeX.
Meinl, Thorsten, Borgelt, Christian, Berthold, Michael R., Discriminative Closed Fragment Mining and Perfect Extensions in MoFa, In: Onaindia, Eva, Staab, Steffen, STAIRS 2004 - Proceedings of the Second Starting AI Researchers' Symposium. ( Frontiers in Artificial Intelligence and Applications , Vol. 109 ). Amsterdam: IOS Press, pp. 3–14, 2004; BibTeX.
Meinl, Thorsten, Borgelt, Christian, Berthold, Michael R., Mining fragments with fuzzy chains in molecular databases. In: Proceedings of the Workshop W7 on Mining Graphs, Trees and Sequences (MGTS '04), Kok, Joost, Washio, Takashi, pp. 49–60, 2004; BibTeX.
Ortolani, Marco, Callan, Ondine, Patterson, David E., Berthold, Michael R., Fuzzy Subgroup Mining for Gene Associations. In: Proceedings of the North American Fuzzy Information Processing Society (NAFIPS), June, pp. 121–126, 2004; BibTeX.

Year 2003

Berthold, Michael R., Mixed Fuzzy Rule Formation, International Journal of Approximate Reasoning (IJAR), vol. 32, pp. 67–84, Elsevier, 2003; BibTeX.
Berthold, Michael R., Hall, Lawrence O., Visualizing Fuzzy Points in Parallel Coordinates, IEEE Transactions on Fuzzy Systems, vol. 11, no. 3, pp. 369–374, 2003; BibTeX.
Gabriel, Thomas R., Berthold, Michael R., Constructing Hierarchical Rule Systems. In: Proceedings of the 5th International Symposium on Intelligent Data Analysis (IDA 2003), Berthold, Michael R., Lenz, Hans-Joachim, Bradley, Elizabeth, Kruse, Rudolf, Borgelt, Christian, Advances in Intelligent Data Analysis, Series Lecture Notes in Computer Science (LNCS), pp. 76–87, Springer Verlag, 2003; BibTeX.
Gabriel, Thomas R., Berthold, Michael R., Formation of Hierarchical Fuzzy Rule Systems. In: Proc. Conf. North American Fuzzy Information Processing Society (NAFIPS 2003), 2003; BibTeX.
Hofer, Heiko, Borgelt, Christian, Berthold, Michael R., Large Scale Mining of Molecular Fragments with Wildcards, In: Advances in Intelligent Data Analysis V. ( Lecture Notes in Computer Science (LNCS) ). Springer Verlag, pp. 380–389, 2003; BibTeX.
Wiswedel, Bernd, Patterson, David E., Berthold, Michael R., Interactive Exploration of Fuzzy Clusters using Neighborgrams. In: IEEE International Conference on Fuzzy Systems (FUZZ-IEEE 2003), FUZZ-IEEE 2003, 2003; BibTeX.
Intelligent Data Analysis: An Introduction, Berthold, Michael R., Hand, David J., 2nd edition, Springer Verlag, 2003; BibTeX.

Year 2002

Berthold, Michael R., Fuzzy Logic, In: Kok, Joost N,, Boers, Egbert, Kosters, Walter A., van der Putten, Peter W.H., Poel, Mannes, Artificial Intelligence: Definition, Trends, Techniques and Cases. ( Encyclopedia of Life Support Systems (EOLSS), Developed under the Auspices of the UNESCO ). Oxford, UK: Eolss Publishers, 2002; BibTeX.
Berthold, Michael R., Patterson, David E., Ortolani, Marco, Hofer, Heiko, Hoeppner, Frank, Callan, Ondine, Shape-Invariant Fuzzy Clustering of Proteomics Data. In: Proceedings of the North American Fuzzy Information Processing Society (NAFIPS), July, pp. 52–56, 2002; BibTeX.
Berthold, Michael R., Wiswedel, Bernd, Patterson, David E., Neighborgram Clustering: Interactive Exploration of Cluster Neighborhoods. In: Proceedings of IEEE Data Mining, pp. 581–584, 2002; BibTeX.
Borgelt, Christian, Berthold, Michael R., Mining Molecular Fragments: Finding Relevant Substructures of Molecules. In: Proceedings of the IEEE Intl. Conf. on Data Mining ICDM, pp. 51–58, IEEE Press, 2002; BibTeX.
Ortolani, Marco, Hofer, Heiko, Patterson, David E., Höppner, Frank, Berthold, Michael R., Fuzzy information granules in time series data. In: IEEE International Conference on Fuzzy Systems, pp. 695–699, IEEE Press, 2002; BibTeX.

Year 2001

Berthold, Michael R., Subsampling Conflicts to Construct Better Fuzzy Rules. In: Proc. Joint 9th IFSA World Congress and 20th NAFIPS International Conference (IFSA/NAFIPS), vol. 2, pp. 1098–1103, IEEE Press, 2001; BibTeX.
Patterson, David E., Berthold, Michael R., Clustering in Parallel Universes. In: IEEE Conference on Systems, Man and Cybernetics, IEEE Press, 2001; BibTeX.
Silipo, Rosaria, Vergassola, R., Zong, W., Berthold, Michael R., Knowledge-Based and Data-Driven Models in Arrhythmia Fuzzy Classification, Methods of Information in Medicine, no. 40, pp. 397–402, 2001; BibTeX.

Year 2000

Berthold, Michael R., Learning Fuzzy Models and Potential Outliers, In: della Riccia, Giacomo, Kruse, Rudolf, Lenz, Hans-Joachim, Computational Intelligence in Data Mining. Springer Verlag, pp. 111–126, 2000; BibTeX.
Berthold, Michael R., Holve, Rainer, Visualizing High Dimensional Fuzzy Rules. In: Proceedings of NAFIPS, pp. 64–68, IEEE Press, 2000; BibTeX.
Fischer, Ingrid, Koch, Manuel, Berthold, Michael R., Learning and Rewriting Rules in Fuzzy Rule Nets. In: Graph Transformation With Industrial Relevance, pp. 263–270, 2000; BibTeX.
Hall, Lawrence O., Berthold, Michael R., Fuzzy Parallel Coordinates. In: Proceedings of NAFIPS, pp. 74–78, IEEE Press, 2000; BibTeX.
Hand, David J., Fisher, Doug, Berthold, Michael R., Guest-Editorial: Advances in Intelligent Data Analysis, Intelligent Data Analysis, vol. 4, pp. 93–95, 2000; BibTeX.
Holve, Rainer, Berthold, M. R., Visualizing High Dimensional Fuzzy Rules. In: VDI Bericht (Computational Intelligence im Industriellen Einsatz), no. 1526, pp. 21–25, VDI Press, 2000; BibTeX.
Silipo, Rosaria, Berthold, Michael R., Input Features Impact on Fuzzy Decision Processes, IEEE Transcation on Systems, Man, and Cybernetics, Part B: Cybernetics, vol. 30, no. 6, pp. 821–834, IEEE Press, 2000; BibTeX.

Year 1999

Berthold, Michael R., Fuzzy Logic, In: Intelligent Data Analysis: An Introduction. Springer Verlag, pp. 269–298, 1999; BibTeX.
Berthold, Michael R., Fuzzy Models and Potential Outliers. In: Proceedings of NAFIPS, pp. 532–535, IEEE Press, 1999; BibTeX.
Berthold, Michael R., Two Stage Fuzzy Models and Potential Outliers. In: Fuzzy-Neuro-Systems, pp. 41–53, Leipziger Universitätsverlag, 1999; BibTeX.
Berthold, Michael R., Hall, Lawrence O., Visualizing Fuzzy Points in Parallel Coordinates. University of California at Berkeley, UCB/CSD-99-1082, December, 1999; BibTeX.
Berthold, Michael R., Huber, Klaus-Peter, Constructing Fuzzy Graphs from Examples, Intelligent Data Analysis, vol. 3, no. 1, pp. 37–54, 1999; BibTeX.
Silipo, Rosaria, Berthold, Michael R., Discriminative Power of Input Features in a Fuzzy Model. In: Proc. 3rd International Symposium on Intelligent Data Analysis (IDA 1999), Hand, David J., Kok, Joost, Berthold, Michael R., pp. 87–98, Springer Verlag, 1999; BibTeX.
Silipo, Rosaria, Berthold, Michael R., Interpreting Fuzzy Models: The Discriminative Power of Input Features. 1999; BibTeX.
Intelligent Data Analysis: An Introduction, Berthold, Michael R., Hand, David J., Springer Verlag, 1999; BibTeX.
Advances in Intelligent Data Analysis, Hand, David J., Kok, Joost, Berthold, Michael R., Series Lecture Notes in Computer Science, Springer Verlag, 1999; BibTeX.

Year 1998

Berthold, Michael R., On Fuzzy Graphs and Intelligent Data Analysis. In: BISC Special Interest Group in Earth Sciences Workshop, Berkeley, 1998; BibTeX.
Berthold, Michael R., Cohen, Paul, Liu, Xiaohui, Intelligent Data Analysis: Reasoning about Data, AI Magazine, vol. 19, no. 4, 1998; BibTeX.
Berthold, Michael R., Diamond, Jay, Constructive Training of Probabilistic Neural Networks, NeuroComputing, vol. 19, pp. 167–183, 1998; BibTeX.
Berthold, Michael R., Huber, Klaus-Peter, Missing Values and Learning of Fuzzy Rules, International Journal of Uncertainty, Fuzziness and Knowledge-Based Systems, vol. 6, no. 2, pp. 171–178, 1998; BibTeX.
Berthold, Michael R., Huber, Klaus-Peter, Comparing Fuzzy Graphs. In: Fuzzy-Neuro-Systems, pp. 234–240, infix Verlag, 1998; BibTeX.
Berthold, Michael R., Huber, Klaus-Peter, Efficiently Comparing Fuzzy Graphs. In: Proceedings of NAFIPS, pp. 208–211, IEEE Press, 1998; BibTeX.
Berthold, Michael R., Huber, Klaus-Peter, Missing Values and Learning of Fuzzy Rules, International Journal of Uncertainty, Fuzziness and Knowledge-Based Systems, World Scientific Publishers, 1998; BibTeX.
Berthold, Michael R., Sudweeks, Fay, Newton, Sid, Coyne, Richard, It makes sense: Using an autoassociative Neural Network to explore typicality in computer mediated discussions, In: Rafaeli, Sheizaf, Sudweeks, Fay, McLaughlin, Margaret, Network and Netplay: Virtual Groups on the Internet. AAAI/MIT Press, pp. 191–219, 1998; BibTeX.
Fischer, Ingrid, Koch, Manuel, Berthold, Michael R., Proving Properties of Neural Networks with Graph Transformations. In: IEEE International Joint Conference on Neural Networks, vol. 1, pp. 441–446, 1998; BibTeX.
Fischer, Ingrid, Koch, Manuel, Berthold, Michael R., Showing the Equivalence of Two Training Algorithms, Part I. In: IEEE International Joint Conference on Neural Networks, vol. 1, pp. 441–446, 1998; BibTeX.
Fischer, Ingrid, Koch, Manuel, Berthold, Michael R., Showing the Equivalence of Two Training Algorithms, Part II. In: IEEE International Joint Conference on Neural Networks, vol. 1, pp. 447–456, 1998; BibTeX.
Fischer, Ingrid, Koch, Manuel, Berthold, Michael R., Formalizing Neural Networks. In: Fuzzy-Neuro-Systems, pp. 218–225, infix Verlag, 1998; BibTeX.
Huber, Klaus-Peter, Berthold, Michael R., Datenbasierte Verhaltensanalyse mit Fuzzy Graphen, In: Data Mining: Theoretische Aspekte und Anwendungen, Beitraege zur Wirtschaftsinformatik. Physica Verlag, 1998; BibTeX.
Huber, Klaus-Peter, Berthold, Michael R., Application of Fuzzy Graphs for Metamodeling. In: IEEE International Conference on Fuzzy Systems, vol. 1, pp. 640–645, 1998; BibTeX.
Liu, Xiaohui, Cohen, Paul, Berthold, Michael R., Editorial: Reasoning about Data, Intelligent Data Analysis, vol. 2, no. 2, 1998; BibTeX.

Year 1997

Konstruktives Training Probabilistischer Neuronaler Netze für die Musterklassifikation, Berthold, Michael R., DISKI 155, infix Verlag, 1997; BibTeX.
Berthold, Michael R., Fischer, Ingrid, Formalizing Neural Networks using Graph Transformations. In: IEEE International Conference on Neural Networks, pp. 275–280, 1997; BibTeX.
Berthold, Michael R., Huber, Klaus-Peter, Tolerating Missing Values in a Fuzzy Environment. In: Proceedings of the 7th IFSA World Congress (Prague), vol. 1, pp. 359–363, 1997; BibTeX.
Berthold, Michael R., Huber, Klaus-Peter, Missing Values and Learning of Fuzzy Rules. In: Fuzzy-Neuro-Systems, 1997; BibTeX.
Berthold, Michael R., Huber, Klaus-Peter, Constructing Fuzzy Graphs from Examples. 1997; BibTeX.
Berthold, Michael R., Sudweeks, Fay, Newton, Sid, Coyne, Richard, Clustering on the Net: Applying Autoassociative Neural Network to Computer Mediated Discussions, Computer-Mediated Communication, vol. 2, no. 4, 1997; BibTeX.
Huber, Klaus-Peter, Berthold, Michael R., Simulation Data Analysis Using Fuzzy Graphs, In: Liu, Xiaohui, Cohen, Paul, Berthold, Michael, Advances in Intelligent Data Analysis – Reasoning about Data. ( Lecture Notes in Computer Science , Vol. 1280 ). Springer Verlag, pp. 347–358, 1997; BibTeX.
Advances in Intelligent Data Analysis – Reasoning about Data, Liu, Xiaohui, Cohen, Paul, Berthold, Michael R., Series LNCS1280, Springer Verlag, 1997; BibTeX.

Year 1996

Berthold, Michael R., A Probabilistic Extension for the DDA Algorithm. In: IEEE International Conference on Neural Networks, vol. 1, pp. 341–346, 1996; BibTeX.
Berthold, Michael R., Huber, Klaus-Peter, On Missing Values and Fuzzy Rules. In: Proceedings of the Fourth European Congress on Intelligent Techniques and Soft Computing, 1996; BibTeX.
Berthold, Michael R., Huber, Klaus-Peter, Building Fuzzy Graphs from Examples. In: IEEE Conference on Fuzzy Systems, vol. 1, pp. 608–613, 1996; BibTeX.
Berthold, Michael R., Huber, Klaus-Peter, Automatic Construction of Fuzzy Graphs for Function Approximation. In: Proceedings of NAFIPS, pp. 319–323, 1996; BibTeX.
Sudweeks, Fay, Berthold, Michael R., Net Conversations: Applying a Neural Network Analysis to Computer Mediated Communication. In: IASTED International Conference on Modelling, Simulation, and Optimization, 1996; BibTeX.
Syrjakow, Michael, Szczerbicka, Helena, Berthold, Michael R., Huber, Klaus-Peter, Acceleration of Direct Model Optimization Methods by Function Approximation. In: European Simulation Symposium, Bruzzone, Agostino G., Kerckhoffs, Eugene J. H., vol. 2, pp. 181–186, 1996; BibTeX.

Year 1995

Berthold, Michael R., Diamond, Jay, Boosting the Performance of RBF Networks with Dynamic Decay Adjustment. In: Advances in Neural Information Processing Systems, Tesauro, G., Touretzky, D. S., Leen, T. K., vol. 7, pp. 521–528, The MIT Press, 1995; BibTeX.
Berthold, Michael R., Huber, Klaus-Peter, From Radial to Rectangular Basis Functions: A new Approach for Rule Learning from Large Datasets. University of Karlsruhe, 15/95, 1995; BibTeX.
Berthold, Michael R., Huber, Klaus-Peter, Extraction of Soft Rules from RecBF Networks. In: Advances in Intelligent Data Analysis (IIAS), Lasker, George E., Liu, Xiaohui, vol. 1, pp. 11–15, 1995; BibTeX.
Berthold, Michael R., Huber, Klaus-Peter, Neural Network based Construction of Fuzzy Graphs. In: Proceedings of the Fourth Annual Conference on Fuzzy Theory and Technology (North Carolina), pp. 170–173, 1995; BibTeX.
Berthold, Michael R., Huber, Klaus-Peter, Extraction of Soft Rules from RecBF Networks. In: Proceedings of the IDA Symposium, Baden-Baden, Germany, 1995; BibTeX.
Berthold, Michael R., Sudweeks, Fay, Newton, Sid, Coyne, Richard, ``It makes sense'': Using an autoassociative neural network to explore typicality in computer mediated discussions. In: Network and Netplay: Virtual Groups on the Internet, Rafaeli, S., Sudweeks, F., McLaughlin, M., AAAI/MIT Press, 1995; BibTeX.
Furrer, Andreas, Berthold, Michael R., Konstruktive Lernverfahren für Neuronale Netze mit elliptischen Basisfunktionen. In: Proceedings des 3. GI-Workshops ``Fuzzy Neuro Systeme'', 1995; BibTeX.
Huber, Klaus-Peter, Berthold, Michael R., Modellidentifikation durch Funktionsapproximation mit neuronalen RecBF-Netzwerken. In: Proceedings des 3. GI-Workshops ''Fuzzy-Neuro-Systeme '95'', pp. 189–196, 1995; BibTeX.
Huber, Klaus-Peter, Berthold, Michael R., Building Precise Classifiers with Automatic Rule Extraction. In: IEEE International Conference on Neural Networks, vol. 3, pp. 1263–1268, 1995; BibTeX.
Huber, Klaus-Peter, Berthold, Michael R., Data Analysis with Rule Generating Learning Algorithms. In: Advances in Intelligent Data Analysis, Lasker, George E., Liu, Xiaohui, vol. 1, pp. 80–84, IIAS, 1995; BibTeX.
Huber, Klaus-Peter, Berthold, Michael R., Data Analysis with Rule Generating Learning Algorithms, Experimental Comparison of Two Learning Systems. In: Proceedings of the IDA Symposium, Baden-Baden, Germany, 1995; BibTeX.
Tagscherer, Michael, Piekenbrock, Stefan, Berthold, Michael R., Learning Reactive Behaviour of a Walking Machine Using RBF Networks. In: Neural Computing, Research and Applications, Keating, John G., Series 3, pp. 46–53, St. Patrick's College, 1995; BibTeX.

Year 1994

Berthold, Michael R., A Time Delay Radial Basis Function Network for Phoneme Recognition. In: IEEE International Conference on Neural Networks, vol. 7, pp. 4470–4473, 1994; BibTeX.
Berthold, Michael R., The TDRBF: A Shift Invariant Radial Basis Function Network. In: Irish Neural Network Conference, 1994; BibTeX.
Berthold, Michael R., Feldbusch, Fridtjof, Ein Trainingsverfahren für Radial Basis Function Netzwerke mit Selektion der Zentren und dynamischer Adaption der Radii. In: Fuzzy Logik – Theorie und Praxis, Reusch, B., pp. 78–85, Springer Verlag, 1994; BibTeX.